What packages are available?
map & more
The map & more package includes the mapping onto the genome, transcriptome and/or splice junction reference libraries of the selected organism. We can also map your data to a small RNA library and predict novel microRNAs.
Additionally you will receive quality metrics and statistics for the mapping.
We support basecode as well as colorcode reads from all major sequencing platforms. Paired-end data or bisulfite treated sequences can also be mapped.
variants
This package adds gene fusion and structural rearrangement
analysis from the mapped data*,
You will also receive a one month online account on our server
enabling you to analyze your data for SNPs and view copy number
variations calculated from your data.
* paired-end data is required for these
biology complete
This package brings you the full interpretative power only Genomatix can provide by adding a one month Genomatix Genome Analyzer (GGA) account.
This includes all the software modules of the Genomatix Software Suite plus the extended functionality of the NGS analysis software.
Our software will enable you to:
- call peaks/clusters from the mapping results
- visualize and correlate your data within our comprehensive genome annotation including comparative genomics for 29 organisms
- conduct scientific analyses in genomic context, to interpret associated gene regulation mechanisms or to look for expression patterns in your data
- generate and evaluate networks and pathways related to or based on your data
- create your own tf binding site definitions or use the full power of our matrix library to analyze promoters
- perform extended literature searches to automatically extract knowledge from publications that is relevant for your project
All this and more can be done by simply logging into the account provided from any internet-connected computer using a standard browser software.
Your mapping results will come pre-loaded into the account, so can start to work on it immediately.
features
Here is an overview of the features coming with each package:
feature | map & more | variants | biology complete |
---|---|---|---|
High quality alignment of NGS reads to genome, transcriptome, and/or small RNA library | ![]() | ![]() | |
Coverage of known and novel splice junctions | ![]() | ![]() | |
Read classification statistics | ![]() | ![]() | |
Comprehensive report and file descriptions | ![]() | ![]() | |
0.5 TB hard disk (with read & result files) | ![]() | ||
Detection of SNPs | ![]() | ||
Detection of structural variants | ![]() | ||
Detection of gene fusions | ![]() | ||
Detection of CNVs relative to reference genome | ![]() | ||
Intuitive web-based GUI (e.g. for SNP Analyses) | ![]() | ||
Support via email | ![]() | ![]() | ![]() |
Complete RNA-Seq workflow | ![]() | ||
Complete ChIP-Seq workflow | ![]() | ||
Retrieval and visualization of extensive genome annotation (31 species) | ![]() | ||
Comparative genomics | ![]() | ||
Correlation of genomic regions | ![]() | ||
Access to extensive TF binding site data base and analysis (MatInspector) | ![]() | ||
Gene regulatory module analysis | ![]() | ||
Literature information from expert curation and data mining | ![]() | ||
Pathway and gene enrichment analyses | ![]() | ||
Project and result management | ![]() | ||
Intuitive web-based GUI for data interpretation | ![]() |
consulting
For additional input on your analysis and results you can book the expert knowledge of our consulting team.
available species
The mygenomatix services are currently vailable for these organisms:
vertebrates
- Homo sapiens (human)
- Macaca mulatta (rhesus monkey)
- Pan troglodytes (chimp)
- Mus musculus (mouse)
- Rattus norvegicus (rat)
- Equus caballus (horse)
- Canis lupus familiaris (dog)
- Bos taurus (cow)
- Sus scrofa (pig)
- Monodelphis domestica (opossum)
- Ornithorhynchus anatinus (platypus)
- Danio rerio (zebrafish)
- Gallus gallus (chicken)
- Taeniopygia guttata (zebrafinch)
plants
- Arabidopsis thaliana (thale cress)
- Vitis vinifera (wine grape)
- Populus trichocarpa (western balsam poplar)
- Oryza sativa (rice)
- Sorghum bicolor (sorghum)
- Glycine max (soybean)
- Zea mays (corn)
insects
- Anopheles gambiae (mosquito)
- Drosophila melanogaster (fruitfly)
- Apis mellifera (honeybee)
fungi
- Saccharomyces cerevisiae (baker's yeast)
- Schizosaccharomyces pombe (fission yeast)
- Neurospora crassa (neurospora)
other
- Caenorhabditis elegans (nematode)
- Plasmodium falciparum (plasmodium)
sample screenshots
Here are some sample screenshots of the data interpretation options:







